PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 236aa    MW: 26884.7 Da    PI: 7.444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014794genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05102125123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C++C+ksF+   +L +H  + H
  Lus10014794 102 WQCGYCKKSFRAEKYLDQHFDSmH 125
                  58*****************77666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.912102125IPR007087Zinc finger, C2H2
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEKFLPSAVI LLLASTFFSQ ALCQEVGEIG GDRITEKQSV HEHQVHCSRE RSRAAWKIIE  60
EYLMPFVEQE RYQIPTNCRL HPSNDLFRDQ EQHKINYDFN QWQCGYCKKS FRAEKYLDQH  120
FDSMHFDLLN FTDSRCLADI CGALHCDSVM DSKSVKKIRC NPAAASKNHH LCESLADSCF  180
PLILGRSAAG LHDLFLRQFC DALTCKGKKK LFPKGGKVSF NDNLQPFGID NQVGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321672.11e-105zinc finger family protein
TrEMBLB9IF521e-105B9IF52_POPTR; Zinc finger family protein
STRINGPOPTR_0015s10200.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-81C2H2-like zinc finger protein